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Reading Your Marker Cards

This guide explains each part of an education card: the cited source, what the research examined, where uncertainty remains, and questions you may want to raise with a healthcare professional.

The three numbers that describe a variant

Researchers use different measures depending on whether a variant follows a Mendelian pattern or contributes a smaller effect alongside many other factors. Cards show the available measure for each variant.

Penetrance

Used for Mendelian variants

Of people with this genotype, what proportion was reported with the condition during the study period?

Range: 0% – 100%

Example: Published estimates for HFE C282Y homozygotes vary by population and study design.

Odds Ratio (OR)

Used for complex or polygenic research findings

How do the reported odds compare between groups with and without the variant?

Range: 0 – ∞ (1.0 = no effect)

Example: An odds ratio compares study groups. It does not state an individual's probability or relative risk.

log₂(OR)

Uses the same effect measure as the odds ratio, shown on a symmetric scale

The log of the odds ratio. Cards may show it as an effect-size measure on a symmetric scale, where equal values in opposite directions have equal magnitude.

Range: −∞ to +∞ (0 = no effect)

Example: log₂(2) = +1; log₂(0.5) = −1. Both represent the same magnitude in opposite directions.

Mendelian vs complex variants

Mendelian (single-gene)Complex (polygenic)
Caused byONE gene with a large reported effectMANY genes, often hundreds, plus environmental factors
InheritanceMay follow dominant, recessive, X-linked, or mitochondrial inheritance patternsNo single inheritance pattern; the estimate combines multiple small effects
Number of variants1–few rare, high-impactHundreds, each tiny effect
Card archetypemendelian - penetrance barcomplex_trait - log₂(OR) bar
ExamplesExamples vary by condition and evidence sourceAPOE/Alzheimer's, TCF7L2/T2D, FTO/obesity

Card archetypes

Complex-trait cards

Use a log₂(OR) bar centred at 0. Negative values left of center, positive values right. Equal-strength variants are equidistant from center.

Mendelian cards

Use a 0 to 100% bar for the proportion reported in a study for a given genotype. It may include inheritance-pattern and population-frequency context.

Evidence tiers

Each card includes an evidence tier based on independent replications and the cited source material.

TierStarsMeaning
STRONG★★★★★Genome-wide significance reported in large meta-analyses or a well-established Mendelian finding.
VALIDATED★★★★Three or more independent GWAS replications.
MODERATE★★★1–2 replications with some heterogeneity across studies.
EMERGING★★Single large study, awaiting independent replication.
EXPLORATORYCandidate-gene-era finding with weak modern replication. Treat with caution.

Inheritance patterns

CodePatternWhat it means
ADAutosomal dominantA variant in one copy may be sufficient for a trait to be inherited. Each child of an affected parent can have a 50% chance of inheriting it.
ARAutosomal recessiveTwo copies may be needed for the trait. If both parents have one copy, each child can have a 25% chance of inheriting two copies.
XLRX-linked recessiveX-linked inheritance can affect people differently depending on their sex chromosomes. A parent with one relevant X-linked copy may pass it to half of their children.
XLDX-linked dominantIn X-linked inheritance, an affected father passes the relevant X chromosome to all daughters.
MTMitochondrialMitochondrial DNA is inherited from the mother. Children may inherit the relevant variant from an affected mother, but not from an affected father.

How to read the bar visualisation

On complex-trait cards, the bar is centred at 0 (the no-effect point). The triangular marker sits at log₂(OR), so:

  • A marker far to the left = strongly negative effect (lower than baseline).
  • A marker near center = small effect, close to no effect.
  • A marker far to the right = strongly positive effect (higher than baseline).

Colour reflects direction relative to the reference point. Cards list the original odds ratio and a plain-language comparison alongside the log₂ value.

Sample cards

The cards shown here are examples. Available content depends on the source data and information provided for the site.

Sample marker card for How to read a variant label
How to read a variant label
Sample marker card for How to read a source note
How to read a source note
Sample marker card for How to read an uncertainty statement
How to read an uncertainty statement
Sample marker card for How to prepare a question
How to prepare a question
Sample marker card for LRRK2 - Parkinson's disease (rs34637584)
LRRK2 - Parkinson's disease (rs34637584)
Sample marker card for TCF7L2 - type 2 diabetes (rs7903146)
TCF7L2 - type 2 diabetes (rs7903146)

These cards are for education only.

Genetic findings vary with environment, lifestyle, other variants, and study design. Do not use these cards to make health decisions. Discuss personal questions with a qualified professional. Lower-tier findings require greater caution.